CDS

Accession Number TCMCG017C25734
gbkey CDS
Protein Id OMO71477.1
Location join(9114..9278,9623..9754,9849..10016,11476..11683,11780..11861,11962..12070,12178..12294,12400..12624)
GeneID InterPro:IPR000743
Organism Corchorus olitorius
locus_tag COLO4_28218

Protein

Length 401aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01019791.1
Definition Glycoside hydrolase, family 28 [Corchorus olitorius]
Locus_tag COLO4_28218

EGGNOG-MAPPER Annotation

COG_category G
Description Polygalacturonase
KEGG_TC -
KEGG_Module M00081        [VIEW IN KEGG]
KEGG_Reaction R01982        [VIEW IN KEGG]
R02360        [VIEW IN KEGG]
R07413        [VIEW IN KEGG]
KEGG_rclass RC00049        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K01184        [VIEW IN KEGG]
ko:K01213        [VIEW IN KEGG]
EC 3.2.1.15        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
3.2.1.67        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00040        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
map00040        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004553        [VIEW IN EMBL-EBI]
GO:0004650        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005576        [VIEW IN EMBL-EBI]
GO:0005618        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009664        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009827        [VIEW IN EMBL-EBI]
GO:0009830        [VIEW IN EMBL-EBI]
GO:0009838        [VIEW IN EMBL-EBI]
GO:0009900        [VIEW IN EMBL-EBI]
GO:0009901        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010047        [VIEW IN EMBL-EBI]
GO:0010227        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0022411        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030312        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032504        [VIEW IN EMBL-EBI]
GO:0042545        [VIEW IN EMBL-EBI]
GO:0044277        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045229        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048438        [VIEW IN EMBL-EBI]
GO:0048443        [VIEW IN EMBL-EBI]
GO:0048466        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048609        [VIEW IN EMBL-EBI]
GO:0048653        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048827        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0071554        [VIEW IN EMBL-EBI]
GO:0071555        [VIEW IN EMBL-EBI]
GO:0071669        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTCTCTGCAACATATCACTTTAGCTTTAGACAAGTATCTGTCTTCAATGATAATGTTGCTGCTCCTGATGTTAATGGAGGAGAGCAAGATGATTGCCCTCATTCTATAGTGATTAGTGTTGATGAATTCGGAGCTAAAGCCGATGGAACTCCTGATAATGAGGCATTTGAGAAGGCTTGGGAGGAAGCATGTTCTTCTGATGAGGGAGTTGCTCTTGTAGTGCCCGAACAGAAGACCTACCGTCTTAAGCCAATCAAATTCACTGGCCCTTGCAAATCTAATATCTCAGTCAAGATATATGGAACCATTGAAGCATCCGATGATCCATCAGACTACAACCATCCTTTGAAGCATTGGCTTCTGTTTAATAAGGTTGATGATTTACTGGTTGAAGGCGGTGGAACTATCAAGGGCAATGGCAAGATATGGTGGGACAACTCTTGCAAGAGAAATAAAGGCAAAGCTTTGACCTTCAATGAGAACAAGAATTTGGTGGTGAATGGCTTGAAGATCCAAGATTCACAGAAAAAGCATCTATGTTTTGACAGTTGTGTGAATGTTCAAGCTTTCAATCTTGTAGTAACTGCACCAAAAGACAGCCCCAACACTGATGGAATTCATATCACAGGCACCCAAAACATCCTTATTGCAGACAGTACTGTTGGAACTGGTGATGATTGTGTCTCCATTGTCAGCGGATCAAAGAATGTTCAAATCCGGAACATAGTTTGCGGTCCGGGTCATGGAATCAGTATTGGGGGCTTAGGGAAACGAAATTCAGCAGCACATGTCTCAAAAGTTATTGTAGATGGAGCTACCATCTCTGAAACAACAAATGGATTAAGGATCAAGACATGGCAGGGAGGGTCTGGATATGCAGAAGGCATCATATTCCAGAATGTGCACATGAATAATGTGAAAAACCCAATAATAATAGACCAAAACTACTGTGACCAGCGTGCACCATGCCAAGAACAAGAATCAGCAGTACAAGTGAAAAATGTGGCATACCGAAACATTTATGGAACAAGTAAGAAAAAAGTGGCGATATTGTTTGATTGTAGTAAGAGCCATCCATGTGAAGGGATCACCATGGAAAATGTGATGCTGGATGGAGAAGGAAATGCAGCAGCCACAGCAACCTGCAACAATGTCCAAGCCACAACTCTAGGGGATGTTTCTCCAGGTTGTGATATTTTTTGA
Protein:  
MFSATYHFSFRQVSVFNDNVAAPDVNGGEQDDCPHSIVISVDEFGAKADGTPDNEAFEKAWEEACSSDEGVALVVPEQKTYRLKPIKFTGPCKSNISVKIYGTIEASDDPSDYNHPLKHWLLFNKVDDLLVEGGGTIKGNGKIWWDNSCKRNKGKALTFNENKNLVVNGLKIQDSQKKHLCFDSCVNVQAFNLVVTAPKDSPNTDGIHITGTQNILIADSTVGTGDDCVSIVSGSKNVQIRNIVCGPGHGISIGGLGKRNSAAHVSKVIVDGATISETTNGLRIKTWQGGSGYAEGIIFQNVHMNNVKNPIIIDQNYCDQRAPCQEQESAVQVKNVAYRNIYGTSKKKVAILFDCSKSHPCEGITMENVMLDGEGNAAATATCNNVQATTLGDVSPGCDIF